jQuery(document).ready(function($) {
	var side_navigation = $("#side_navigation");
	var i = 1;
	$('#main h3').each(function(){
		var text = i + ". " + $(this).html() ;
		var link = $("<a>").attr('href','#'+i);
		link.html(text);
		$(this).html(text).attr("id", i);

		$("#side_navigation").append(link);
		i++;
	});

	$('#main .habitat h4 a').vAlign();


	$("#nav ul").hide();
	$("#nav li.current-menu-parent ul").each(function(){
		$(this).show().siblings('a').addClass('open');
	});

	$("#nav li:has(ul)>a").each(function(){
		$(this).addClass('accordion');

		$(this).click(function(){
			$(this).siblings('ul').slideToggle();
			$(this).toggleClass('open');
			return false;
		});
	});


});

(function($) {
	$.fn.vAlign = function() {
		return this.each(function(i){
					var ah = $(this).height();
					var ph = $(this).parent().height();
					var mh = (ph - ah) / 2;
					$(this).css('margin-top', mh);
					log(ah);
		});
	};
})(jQuery)

window.log = function(){
  log.history = log.history || [];   // store logs to an array for reference
  log.history.push(arguments);
  if(this.console){
    console.log( Array.prototype.slice.call(arguments) );
  }
};



jQuery.noConflict();





jQuery(document).ready(function(){



  // Attachin mp3 player for audio files
  player_href = "http://www.lichens.ie/dewplayer/dewplayer-mini.swf?mp3=";

  i = 0;
  jQuery("a[href$='mp3']").each(function() {
    mp3_href = jQuery(this).attr('href');
    final_href = player_href+mp3_href;


    mp3_attr = "mp3"+i;
    jQuery(this).after("<span id='"+mp3_attr+"'></span>");
    jQuery(this).remove();


		var so = new SWFObject(final_href,"mp3","160","18","9","#000000");
		so.addParam("quality","best");
		so.addParam("salign","lt");
		so.addParam("scale","noscale");
		so.addParam("wmode","transparent");
		so.write("mp3"+i);

    i++;

  });

        var so = new SWFObject("http://www.lichens.ie/wp-content/themes/lichens/header.swf","header","950","300","9","#000000");
		so.addParam("quality","best");
		so.addParam("salign","lt");
		so.addParam("scale","noscale");
		so.addParam("wmode","transparent");
		so.write("header");

  //initMenus();


});

//function initMenus() {
//
//
//    var url = document.location.href;
//		log(location.pathname);
//    var trimmed_url = location.protocol + "//" + location.host + location.pathname.slice(0, location.pathname.indexOf("/", 20)) + "/";
//    //console.log(url);
//    var selector = "#nav ul a[href^='"+trimmed_url+"']";
//    //console.log(trimmed_url);
//		log(trimmed_url);
//
//    if(url != "http://www.lichens.ie/" &&
//				url != "http://www.lichens.ie/view-lichens-by/lichens-by-habitat/burren/" &&
//				url != "http://www.lichens.ie/view-lichens-by/lichens-by-habitat/atlantic-woodland-lichens-oceanic-climate/"
//			)
//
//		{
//        jQuery(selector).addClass('active');
//    }
//
//    jQuery("#nav ul a.active").each(function() {
//        jQuery(this).parent().parent().show().siblings("a").addClass("open");
//    });
//
//
//    jQuery('ul#nav li:has(ul)>a').addClass("accordion");
//	//jQuery('ul#nav ul').hide();
//	jQuery('ul#nav ul:not(:has(a.active))').hide().siblings("a").addClass("close");
//
//
//	jQuery('ul#nav a.accordion').click( function() {
//        var currentSubList =  jQuery(this).siblings('ul');
//        currentSubList.slideToggle();
//
//        if( jQuery(this).hasClass("open") ) {
//            jQuery(this).addClass("close").removeClass("open");
//        }
//        else {
//            jQuery(this).addClass("open").removeClass("close");
//        }
//
//        jQuery(this).blur();
//        return false;
//
//	});
//};